Gecko
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Training
Complete Courses
SARS-CoV-2 Genomics (Command Line)
SARS-CoV-2 Genomics (BaseStack)
Theory Modules
Introduction to Pathogen Sequencing
Introduction to Genomic Epidemiology
Laboratory Modules
Laboratory Methods
Fluorometric DNA Quantitation
Setting Up a MinION Sequencing Run
Loading the MinION Sequencer
Bioinformatics Modules
Introduction to Bioinformatics
Introduction to the Command Line
Running an Assembly Pipeline
BaseStack Modules
Installing Docker
Installing BaseStack
Starting BaseStack
Consensus Assembly in BaseStack
Generating BaseStack Reports
Additional Tabs in BaseStack
Phylogenetics Modules
Manipulating Sequence Data
Multiple Sequence Alignments
Phylogenetic Trees
Phylodynamics Modules
SARS-CoV-2 Modules
Genomic Data for SARS-CoV-2 I
Genomic Data for SARS-CoV-2 II
Genomic Data for SARS-CoV-2 III
Supplemental
Partners and Funding
Additional Software
Consensus Assembly in BaseStack
Mar 31, 2021
Gecko
Gecko
brian.merritt@jhuapl.edu
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